Understanding the evolutionary repercussions of adaptation to new threats
This project will analyse the wider evolutionary repercussions of genetic adaptation to novel threats, by analysing genomic and trait data from tree populations suffering from a fungal pathogen epidemic. In common with many organisms, forest trees face increasing threats to their survival. When exposed to an entirely new threat - such as a pest or pathogen - most individuals are unable to fully defend themselves and may die. Genetic variants already present within natural populations can provide the basis for successful adaptation in response to such threats. Yet, during natural selection, species may lose overall genetic diversity, leaving them at greater risk from subsequent threats. Furthermore, selection on one trait – such as disease resistance – can lead to change in others, with possible consequences for the ecology and survival of the species. The ash dieback epidemic provides the opportunity to further understand how these processes operate in natural populations, and their implications for ecologically important species such as forest trees. We have recently demonstrated that selection for reduced susceptibility to the ash dieback pathogen is happening in Fraxinus excelsior (the ash tree; 10.1126/science.adp2990). Using a large genomic dataset, you will analyse the wider impact of this selection within multiple natural populations of ash trees, also collecting new trait data from woodlands. You will use these data to address key questions such as: - Is selection for reduced susceptibility to ash dieback accompanied by loss of genetic diversity? - Are other adaptive traits also evolving as the epidemic progresses?
The supervisory team will provide one-to-one training in the following research skills: fieldwork techniques; scripting and the use of a high-performance computing cluster, including data management; bioinformatic analysis of genomic data; statistical analysis; data visualisation. The student will also have the opportunity to participate in an extensive range of training provided by the Kew Education & Training team and QMUL Doctoral College, including scientific writing, public engagement and conference presentation (in conjunction with support from the supervisors on these topics), and statutory requirements (including laboratory and field health and safety, good research practice, GPDR and data protection).
Throughout the course of the project, the student will acquire skills and experience in areas that will equip them for a future career within academia, industry or beyond. Skills in data collection in the field, analysis of large and complex datasets, data management and high-performance computing, and the effective communication of complex ideas are transferable to a range of roles, including: as a postdoctoral researcher at a university or other research organisation, as a bioinformatician within the commercial or academic sectors, as a data analyst or policy advisor for a government agency or environmental organisation.
