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Integrating Planetary Atmosphere, Interior, and Photosynthesis Models to Constrain Environmental Controls on the Evolution of Light-Harvesting Processes and Biosignature Production

This is an image depicting the 'flow chart' of the project. Boxes of inputs (including astro parameters, geo parameters, biological constraints, genetic algorithm, planetary environment, and the photosynthesis model) are connected by arrows to a box of outputs (generalised photosynthetic habitable zone, photosynthetic properties).
Project Description

Understanding the broad environmental context in which photosynthesis evolved is key to understanding its significant role in long-term biogeochemical cycles (carbon, in particular) operating in the wider Earth system. Duffy et al. (2023) developed an agnostic evolutionary model of photosynthetic light-harvesting processes. Given some environmental parameters this physics-based, machine learning algorithm ‘evolves’ efficient light-harvesting bioarchitectures. These parameters are the spectral irradiance of light, temperature, and the availability of chemical reductants.

However, this model does not yet couple photosynthetic organisms to the atmospheric and geophysical processes of the Earth, limiting its ability to develop our understanding of the role of the Earth's changing environment in the evolution of photosynthesis, as well as to predict broad biosphere characteristics and possible atmospheric biosignatures in the atmospheres of distant planets. Ecosystems powered by oxygenic and/or anoxygenic photosynthesis offer several remotely detectable atmospheric 'biosignatures', including a strong spectral signal (the ‘red ‘edge’) at the visible/NIR transition, as well as gaseous byproducts of both anoxygenic and oxygenic photosynthesis (O2, CH4, H2S etc.) that are emitted into the atmosphere. Should exoplanetary ecosystems driven by photosynthesis exist, these may be remotely detectable by spectroscopy using next-generation observatories.

This project will leverage existing models of varying complexity, including 1-D photochemical-climate, 2-D geophysical, and 3-D GCMs, that have been modified for comparative planetology (Rushby et al. 2018, 2020; Woodward et al. 2025) to provide more robust input into the evolutionary photosynthesis model, thereby improving constraints on the environmental controls affecting the emergence and evolution of light-harvesting processes. 

Research themes
Project Specific Training

The project will involve training in the use of several different models. Some more advanced models (CESM2, ROCKE3D) have in-person or remote training sessions (and some prerecorded training materials) to provide instruction in these more complex codes if necessary. There is extensive in-house experience in all the models listed here at Birkbeck and QMUL.

Potential Career Trajectory

This project will support a potential career trajectory in academic research across the physical sciences; astrobiology to plant science, and computer modelling. It also provides or develops a number of highly desirable, transferrable technical skills valued in the private and/or public sectors, such as advanced numerical and analytical computer modelling and data analysis and visualisation, research and report writing, presentation and science outreach and engagement.

Project supervisor/s
Andrew Rushby
Natural Sciences
Birkbeck, University of London
a.rushby@bbk.ac.uk
Christopher Duffy
Biological Sciences
Queen Mary, University of London
c.duffy@qmul.ac.uk